Overall information
FSDB ID PP1P0023 Type +1 frameshifting
Data PREDICTED Kingdom prokaryota
Definition Treponema pallidum subsp. pallidum str. Nichols section 49 of 87 of the complete genome. 13370 bp DNA linear BCT 10-OCT-2003
Resource [1] Persson BC, Atkins JF. J Bacteriol. 1998 Jul;180(13):3462-6.
[2] Baranov PV, Gesteland RF, Atkins JF. EMBO Rep. 2002 Apr;3(4):373-7. Epub 2002 Mar 15.
[3] Baranov PV, Gesteland RF, Atkins JF. Gene. 2002 Mar 20;286(2):187-201.
Nucleic acid sequence AE001233
Amino acid sequence
gene 
2207..3313
/gene="TP0576"
CDS Click for details
Graphical view

2141
TAGCGGAGGAGGCCTCAGGCGTTTTCTCCATACACAGAAAGGAAAAGGCAATGGAAATCGAAGAATTTGGTCCACAAATCACCGCCCTCGAGGCGCGCGTGCAGGAAGTAT
GGGGG
AGT
CTTTGAC
Stop codons TAG (2141),
Signal
GGGGG (2252 - 2256)
Slippery sequence
CTTTGAC (2260 - 2266)
Model +1 prokaryote frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene prfB gene
Sequence type Patial genome
Direction + strand
Signal
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nt
Signal
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