Overall information
FSDB ID EM1V0022 Type -1 frameshifting
Data EXPERIMENTAL Kingdom viruses
Definition Gardiavirus genomic sequence. 6277 bp ds-RNA linear VRL 04-JUN-1996
Resource [1] Wang AL, Yang HM, Shen KA, Wang CC. Proc Natl Acad Sci U S A. 1993 Sep 15;90(18):8595-9.
Nucleic acid sequence L13218
Amino acid sequence
gene 
ORF1
CDS Click for details
Graphical view

2802
TAGTGCCTGGTACTCAGACACAACCTGCGCCAT
CCCTTTA
TCCGAT
CGTGTGATGGAGATCGTCAATTACGCGGCAATATGGGATCCTACACAGGAAAGACACGCACAGGTTTCGTGTACACA
Stop codons TAG (2802),
Slippery sequence
CCCTTTA (2835 - 2841)
Spacer TCCGAT (6 nt)
Stimulatory structure
CGTGTGATGGAGATCGTCAATTACGCGGCAATATGGGATCCTACACAGGAAAGACACGCACAGGTTTCGTGTACACA (2848 - 2924)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<