Overall information
FSDB ID EM1V0026 Type -1 frameshifting
Data EXPERIMENTAL Kingdom viruses
Definition Human T-cell lymphotropic virus 1, complete genome. 8507 bp DNA linear VRL 17-FEB-2004
Resource [1] Le SY, Shapiro BA, Chen JH, Nussinov R, Maizel JV. Genet Anal Tech Appl. 1991 Nov;8(7):191-205.
[2] Nam SH, Copeland TD, Hatanaka M, Oroszlan S. J Virol. 1993 Jan;67(1):196-203.
Nucleic acid sequence AF033817
Amino acid sequence
gene 
gag-pro-pol
CDS Click for details
Graphical view

2239
TTTAAAC
CAGAAC
GCCTCCAGGCCTTGCAACACTTGGTCCGGAAGGCCCTGGAGGCAGGC
Slippery sequence
TTTAAAC (2239 - 2245)
Spacer CAGAAC (6 nt)
Stimulatory structure
GCCTCCAGGCCTTGCAACACTTGGTCCGGAAGGCCCTGGAGGCAGGC (2252 - 2298)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
1712
AAAAAAC
TCCA
TAGGGGGGGAGGTTTAACCTCCCCCCCCACATTACAGCAAGTCCTTCCTAACC
Slippery sequence
AAAAAAC (1712 - 1718)
Spacer TCCA (4 nt)
Stimulatory structure
TAGGGGGGGAGGTTTAACCTCCCCCCCCACATTACAGCAAGTCCTTCCTAACC (1723 - 1775)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<