| FSDB ID | PP1P0013 | Type | +1 frameshifting | ||
| Data | PREDICTED | Kingdom | prokaryota | ||
| Definition | Enterococcus faecalis V583, section 6 of 11 of the complete genome. 300029 bp DNA linear BCT 28-MAR-2003 | ||||
| Resource |
[1]
Baranov PV, Gesteland RF, Atkins JF. EMBO Rep. 2002 Apr;3(4):373-7. Epub 2002 Mar 15. [2] Baranov PV, Gesteland RF, Atkins JF. Gene. 2002 Mar 20;286(2):187-201. |
||||
| Nucleic acid sequence | AE016952 | ||||
| Amino acid sequence | |||||
| gene |
complement(175553..176654) /gene="prfB" /locus_tag="EF1762" /note="This region contains an authentic frame shift and is not the result of a sequencing artifact; peptide chain release factor 2, programmed frameshift; identified by match to PFAM protein family HMM PF03462" |
||||
| Graphical view | |||||||||||||
 
|
|||||||||||||
| Model | +1 prokaryote frameshift signal | |||||||
| FSFinder parameters
Run FSFinder (You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.) |
||||||||
| Target gene | prfB gene | |||||||
| Sequence type | Patial genome | |||||||
| Direction | - strand | |||||||
|
||||||||