Overall information
FSDB ID EM1V0001 Type -1 frameshifting
Data EXPERIMENTAL Kingdom viruses
Definition Beet chlorosis virus isolate BChV-CR, complete genome. 5742 bp RNA linear VRL 25-APR-2002
Resource [1] Hauser S, Stevens M, Beuve M, Lemaire O. Arch Virol. 2002 Apr;147(4):745-62.
Nucleic acid sequence AF352025
Amino acid sequence
CDS Click for details
Graphical view

1545
TAATGTCTCCTATCCTATTGTCCCCCCGCATCTGTC
GGGAAAT
GGACTGA
GCGGCGCCGACCGCCAAACAACCGGC
Stop codons TAA (1545),
Slippery sequence
GGGAAAT (1581 - 1587)
Spacer GGACTGA (7 nt)
Stimulatory structure
GCGGCGCCGACCGCCAAACAACCGGC (1595 - 1620)

Stimulatory structure from PseudoBase
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<