Overall information
FSDB ID PM1V0026 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Bovine parainfluenza virus 3, complete genome. 15456 bp ss-RNA linear VRL 30-MAR-2006
Resource [1] predicted by FSFinder
Nucleic acid sequence NC_002161
Amino acid sequence
gene 
3703..4851
/locus_tag="BPIV3gp3"
/db_xref="GeneID:1489786"
CDS Click for details
gene 
4855..6723
/locus_tag="BPIV3gp4"
/db_xref="GeneID:1489787"
CDS Click for details
Graphical view

4688
TGAAATTACAAGGGTAGATGCAGTTCTCCAGCCTTCATTACCTGGCGAATTCAGATACTA
CCCAAAC
ATCA
TAGCAAAAGGGGTCGGGAAAATCAGACAGTAAAATCAACAACCCTGATATCCAACATTGCAAATCAGGCTA
Stop codons TGA (4688),
Slippery sequence
CCCAAAC (4748 - 4754)
Spacer ATCA (4 nt)
Stimulatory structure
TAGCAAAAGGGGTCGGGAAAATCAGACAGTAAAATCAACAACCCTGATATCCAACATTGCAAATCAGGCTA (4759 - 4829)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<