Overall information
FSDB ID PM1V0009 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Carrot mottle mimic umbravirus (CMoMV) dsRNA1, complete genome. 4201 bp RNA linear VRL 31-MAR-2006
Resource [1] Gibbs,M.J., Ziegler,A., Robinson,D.J., Waterhouse,P.M. and Cooper,J.I. Molecular Plant Pathology On-Line (1996)
Nucleic acid sequence U57305
Amino acid sequence
gene
ORF1 - ORF2
CDS Click for details
CDS Click for details
Graphical view

944
TAACTACTATCTGGCCCAGCAGGCAGTCAAGTTTTTCCTGACGCCGACACTCCTGGATGTGGTGTACAGCACACCCATCCG
GGATTTT
TACT
AGGGGACGTCATTGCAAGGGATGGGGTGTGTACTAAAACAGTGCCTATCATATTGAGCCCCTCCTTGCACATCAGGCCGTCC
Stop codons TAA (944),
Slippery sequence
GGATTTT (1025 - 1031)
Spacer TACT (4 nt)
Stimulatory structure
AGGGGACGTCATTGCAAGGGATGGGGTGTGTACTAAAACAGTGCCTATCATATTGAGCCCCTCCTTGCACATCAGGCCGTCC (1036 - 1117)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

Run FSFinder
(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Signal
Match sequences

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<