Overall information
FSDB ID PM1V0025 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Bovine papillomavirus type 5, complete genome. 7841 bp DNA circular VRL 30-MAR-2006
Resource [1] predicted by FSFinder
Nucleic acid sequence NC_004195
Amino acid sequence
gene
3997..5553
/gene="L2"
/locus_tag="BpV5gp5"
/db_xref="GeneID:955405"
CDS Click for details
gene
5565..7049
/gene="L1"
/locus_tag="BpV5gp6"
/db_xref="GeneID:955406"
CDS Click for details
Graphical view

5382
TGACCTTTGGCCTACAAATATAAACATACAGAATGGTCCCGTGGATGTGGATTTGCAAGACAGCATTTTACCTGGCATAATCATCACAGATTCAGGGGTGGATGGCACATA
TTTTTTA
AACACAT
ACCTACACCCAAGCTTACACAAAAGAAAAAAACGCAGGT
Stop codons TGA (5382),
Slippery sequence
TTTTTTA (5493 - 5499)
Spacer AACACAT (7 nt)
Stimulatory structure
ACCTACACCCAAGCTTACACAAAAGAAAAAAACGCAGGT (5507 - 5545)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
5496
TTTAAAC
ACAT
ACCTACACCCAAGCTTACACAAAAGAAAAAAACGCAGGT
Slippery sequence
TTTAAAC (5496 - 5502)
Spacer ACAT (4 nt)
Stimulatory structure
ACCTACACCCAAGCTTACACAAAAGAAAAAAACGCAGGT (5507 - 5545)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<