Overall information
FSDB ID PM1V0016 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Cereal yellow dwarf virus-RPS RPV Mex-1, complete genome. 5662 bp RNA linear VRL 21-APR-2003
Resource [1] Kim YG, Maas S, Wang SC, Rich A. RNA. 2000 Aug;6(8):1157-65.
[2] Su L, Chen L, Egli M, Berger JM, Rich A. Nat Struct Biol. 1999 Mar;6(3):285-92.
Nucleic acid sequence AF235168
Amino acid sequence
CDS Click for details
Graphical view

1580
TGAGTCCGGAAAGTC
GGGAAAC
GCCAA
GGCGGCCGCGTCCGCCGTACCAACCGCAGCACCAAAAGCCAAGGCCG
Stop codons TGA (1580),
Slippery sequence
GGGAAAC (1595 - 1601)
Spacer GCCAA (5 nt)
Stimulatory structure
GGCGGCCGCGTCCGCCGTACCAACCGCAGCACCAAAAGCCAAGGCCG (1607 - 1653)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<