Overall information
FSDB ID PP1E0008 Type +1 frameshifting
Data PREDICTED Kingdom eukaryota
Definition Pristionchus pacificus ornithine decarboxylase antizyme mRNA, complete cds. 560 bp mRNA linear INV 08-MAY-2000
Resource [1] Ivanov IP, Matsufuji S, Murakami Y, Gesteland RF, Atkins JF. EMBO J. 2000 Apr 17;19(8):1907-17.
Nucleic acid sequence AF217280
Amino acid sequence
gene
oaz
CDS Click for details
Graphical view

91
TGATCGGTCAAAGCCCCCCGTGCTGC
TCCTGA
CGTCCCTAA
CACCCCCGCCAGTGAAGAAATGACTAGAATGGTGAAGAACGTGGTGGCTTCGTGGGAATGGGT
Stop codons TGA (91),
Slippery sequence
TCCTGA (117 - 122)
Spacer CGTCCCTAA (9 nt)
Stimulatory structure
CACCCCCGCCAGTGAAGAAATGACTAGAATGGTGAAGAACGTGGTGGCTTCGTGGGAATGGGT (132 - 194)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model +1 eukaryote frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene oaz gene
Sequence type Patial genome
Direction + strand
Signal
Match sequences

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<