Overall information
FSDB ID EM1V0017 Type -1 frameshifting
Data EXPERIMENTAL Kingdom viruses
Definition Rous sarcoma virus genome, strain Prague C (Pr-C). 9312 bp DNA linear VRL 18-APR-2005
Resource [1] Jacks T, Madhani HD, Masiarz FR, Varmus HE. Cell. 1988 Nov 4;55(3):447-58.
[2] Marczinke B, Fisher R, Vidakovic M, Bloys AJ, Brierley I. J Mol Biol. 1998 Nov 27;284(2):205-25.
Nucleic acid sequence V01197
Amino acid sequence
CDS Click for details
CDS Click for details
Graphical view

2422
TAGAGGGAGTATCCTAGGAAGAGATTGTCTGCAGGGCCTAGGGCTCCGCTTGAC
AAATTTA
T
AGGGAGGGCCACTGTTCTCACTGTTGCGCTACATCTGGCTATTCCGCTCAAATGGAAGCCAGACCACACGCCTGTGTGGATTGACCAGTGGCCCCTCCCTGAAGGTAAACTTGTAGCGC
Stop codons TAG (2422),
Slippery sequence
AAATTTA (2476 - 2482)
Spacer T (1 nt)
Stimulatory structure
AGGGAGGGCCACTGTTCTCACTGTTGCGCTACATCTGGCTATTCCGCTCAAATGGAAGCCAGACCACACGCCTGTGTGGATTGACCAGTGGCCCCTCCCTGAAGGTAAACTTGTAGCGC (2484 - 2602)

Stimulatory structure from PseudoBase
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<