Overall information

FSDB ID	EP1E0004	Type	+1 frameshifting
Data	EXPERIMENTAL	Kingdom	eukaryota
Definition	Mus musculus ornithine decarboxylase antizyme, mRNA (cDNA clone IMAGE:6530039), containing frame-shift errors.
Resource	[1] Nilsson J, Koskiniemi S, Persson K, Grahn B, Holm I. Eur J Biochem. 1997 Dec 1;250(2):223-31. [2] Ivanov IP, Matsufuji S, Murakami Y, Gesteland RF, Atkins JF. EMBO J. 2000 Apr 17;19(8):1907-17.
Nucleic acid sequence		BC060035
Amino acid sequence
gene	oaz

Graphical view

47 TGAAATCCTCCCTGCAGCGGATCCTCAACAGCCACTGCTTCGCCAGAGAGAAGGAAGGGGACAAACGCAGCGCCACGCTTCACGCCAGCCGCACCATGCCGCTTCTTAGTCAGCACAGCCGCGGCGGCTGCAGCAGCGAGAGTTCTAGGGTTGCCCTTAATTGCTGTAGTAACCTGGGTCCGGGGCCTCGGTGGTGC TCCTGA TG TCCCTCACCCACCCCTGAAGATCCCAGGTGGGCGAGGGAACAGTCAGCGGGATC
Stop codons	TGA (47),
Slippery sequence	TCCTGA (244 - 249)
Spacer	TG (2 nt)
Stimulatory structure	TCCCTCACCCACCCCTGAAGATCCCAGGTGGGCGAGGGAACAGTCAGCGGGATC (252 - 305)
	Referenced structure by J. Mol. Biol. (2004) 339, 495-504 Visualized by PseudoViewer

Model

+1 eukaryote frameshift signal

FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)

Target gene

oaz gene

Sequence type

Patial genome

Direction

+ strand

Signal

Match sequences

spacer

nt

RNA structure

Stem Pseudoknot
- Stem1	<
- Stem2	<
- Loop1	<
- Loop2	<
- Loop3	<