Overall information
FSDB ID PM1V0074 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Burkholderia cenocepacia phage BcepB1A, complete genome. 47399 bp DNA linear PHG 30-MAR-2006
Resource [1] predicted by FSFinder
Nucleic acid sequence NC_005886
Amino acid sequence
gene 
complement(11179..>11421)
/gene="BcepB1A gene15'"
/locus_tag="BcepB1Agp15'"
/db_xref="GeneID:2948326"
CDS Click for details
gene 
complement(11307..11723)
/gene="BcepB1A gene15"
/locus_tag="BcepB1Agp15"
/db_xref="GeneID:2948337"
CDS Click for details
Graphical view

11435
TGAGTACAACTGCAG
TTTTTTC
GCGAAAG
GCAAAGCGTCCGGTTTCCTCGCTTCGCTGGCGGAGAAGGTCCAAGCATTGATCACGTCAACGTTGACGGATTCATTGC
Stop codons TGA (11435),
Slippery sequence
TTTTTTC (11420 - 11414)
Spacer GCGAAAG (7 nt)
Stimulatory structure
GCAAAGCGTCCGGTTTCCTCGCTTCGCTGGCGGAGAAGGTCCAAGCATTGATCACGTCAACGTTGACGGATTCATTGC (11406 - 11329)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene other genes in bacteria
Sequence type Patial genome
Direction - strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<