Overall information
FSDB ID PM1V0029 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Carrot red leaf virus, complete genome. 5723 bp ss-RNA linear VRL 30-MAR-2006
Resource [1] predicted by FSFinder
[2] Huang LF, Naylor M, Pallett DW, Reeves J, Cooper JI, Wang H. Arch Virol. 2005 Sep;150(9):1845-55. Epub 2005 May 11.
Nucleic acid sequence NC_006265
Amino acid sequence
gene 
159..3295
/gene="p2"
/locus_tag="CtRLVgp2"
/db_xref="GeneID:3021798"
CDS Click for details
Graphical view

1442
TGAAGAGTATTCAATAGAAGAAGCCAGATACATAATGCAAAACAGGAGAGGGAAAAACCTAGAAGGGAAATCCCAGAACCA
GGGAAAC
GAGCA
ACGCTGCACCGCCAGCGCAACAAACGGCGCTCCAAACATCCAAAAGACAAAGCGCGT
Stop codons TGA (1442),
Slippery sequence
GGGAAAC (1523 - 1529)
Spacer GAGCA (5 nt)
Stimulatory structure
ACGCTGCACCGCCAGCGCAACAAACGGCGCTCCAAACATCCAAAAGACAAAGCGCGT (1535 - 1591)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<