Overall information
FSDB ID EM1V0034 Type -1 frameshifting
Data EXPERIMENTAL Kingdom viruses
Definition Cloning vector TLF97-3, phage lambda lacZ translational fusion vector, complete sequence. 42531 bp DNA linear SYN 13-APR-1996
Resource [1] Levin ME, Hendrix RW, Casjens SR. J Mol Biol. 1993 Nov 5;234(1):124-39.
Nucleic acid sequence U39286
Amino acid sequence
CDS Click for details
Graphical view

10067
TGAACAGACAGAGGACGCCGGGCCCGCAGAGCCTGTTTCTGC
GGGAAAG
TGTT
CGACGGTGAGCTGAGTTTTGCCCTGAAACTGGCGCGTGAGATGGGGCGACCCGACTGGCGTGCCATGCTTGCCGGGATGTCATCCAC
Stop codons TGA (10067),
Slippery sequence
GGGAAAG (10109 - 10115)
Spacer TGTT (4 nt)
Stimulatory structure
CGACGGTGAGCTGAGTTTTGCCCTGAAACTGGCGCGTGAGATGGGGCGACCCGACTGGCGTGCCATGCTTGCCGGGATGTCATCCAC (10120 - 10206)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<