Overall information
FSDB ID PM1V0073 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Bacteriophage N15 virion, complete genome. 46375 bp DNA linear PHG 30-MAR-2006
Resource [1] predicted by FSFinder
Nucleic acid sequence NC_001901
Amino acid sequence
gene
9629..10051
/locus_tag="N15p14"
/note="lambda gene G homolog; synonym: gene 14"
/db_xref="GeneID:1261653"
CDS Click for details
gene
10027..10380
/locus_tag="N15p15"
/note="lambda gene T homolog; synonym: gene 15"
/db_xref="GeneID:1261654"
CDS Click for details
Graphical view

10012
TGAACCCGTTACTGCGGAAAAGCCCTCGCCAGTGAGCTG
AAATTTG
CCATGAAAC
TGGCGCGTGAGTTCGGTCGCCCGGACTGGCGTGCCA
Stop codons TGA (10012),
Slippery sequence
AAATTTG (10051 - 10057)
Spacer CCATGAAAC (9 nt)
Stimulatory structure
TGGCGCGTGAGTTCGGTCGCCCGGACTGGCGTGCCA (10067 - 10102)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene other genes in bacteria
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<