Overall information
FSDB ID PM1V0041 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Murine hepatitis virus strain JHM, complete genome. 31526 bp ss-RNA linear VRL 30-MAR-2006
Resource [1] predicted by FSFinder
Nucleic acid sequence NC_006852
Amino acid sequence
gene 
215..21756
/gene="orf1ab"
/locus_tag="MHV-JHMgp01"
/db_xref="GeneID:3283258"
CDS Click for details
Graphical view

13612
TTTAAAC
GGGTT
CGGGGTACAAGTGTAAATGCCCGTCTTGTACCCTGTGCCAGTGGCTTGGACACT
Slippery sequence
TTTAAAC (13612 - 13618)
Spacer GGGTT (5 nt)
Stimulatory structure
CGGGGTACAAGTGTAAATGCCCGTCTTGTACCCTGTGCCAGTGGCTTGGACACT (13624 - 13677)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<