Overall information
FSDB ID EM1V0020 Type -1 frameshifting
Data EXPERIMENTAL Kingdom viruses
Definition Barley yellow dwarf virus - PAV genomic RNA. 5677 bp RNA linear VRL 04-APR-2002
Resource [1] Di R, Dinesh-Kumar SP, Miller WA. Mol Plant Microbe Interact. 1993 Jul-Aug;6(4):444-52.
[2] Wang S, Miller WA. J Biol Chem. 1995 Jun 2;270(22):13446-52.
[3] Paul CP, Barry JK, Dinesh-Kumar SP, Brault V, Miller WA. J Mol Biol. 2001 Jul 27;310(5):987-99.
[4] Barry JK, Miller WA. Proc Natl Acad Sci U S A. 2002 Aug 20;99(17):11133-8.
[5] Miller W.A., Dinesh-Kumar S.P., Paul C.P. Critic. Rev. Plant Sci. 1995 14(3):179-211.
[6] Miller W.A., Brown C.B., Wang S. Semin. Virol. 1997 8:3-13.
Nucleic acid sequence X07653
Amino acid sequence
CDS Click for details
Graphical view

1143
TGACTCTGT
GGGTTTT
TAGAG
GGGCTCTGTACCGCCTCTGGTTTTGAGAGCCCATTCCCTATTCTCGGGCTGCCAGAGATTGCGGTCACAGACGGAGCCC
Stop codons TGA (1143),
Slippery sequence
GGGTTTT (1152 - 1158)
Spacer TAGAG (5 nt)
Stimulatory structure
GGGCTCTGTACCGCCTCTGGTTTTGAGAGCCCATTCCCTATTCTCGGGCTGCCAGAGATTGCGGTCACAGACGGAGCCC (1164 - 1242)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<