Overall information
FSDB ID PM1E0012 Type -1 frameshifting
Data PREDICTED Kingdom eukaryota
Definition Bombyx mori retrotransposon mag DNA. 4564 bp DNA linear INV 02-APR-1990
Resource [1] Gao X, Havecker ER, Baranov PV, Atkins JF, Voytas DF. RNA. 2003 Dec;9(12):1422-30.
Nucleic acid sequence X17219
Amino acid sequence
gene 
281..1053
/note="ORF1 (gag-like) (AA 1-258)"
CDS Click for details
gene 
832..4365
/note="ORF2 (pol-like) (AA 1-1178)"
CDS Click for details
Graphical view

829
TAAGAACCAGGCGGAGGCAGCCGGGGGTTCAGCACGCACCGGGCGCCG
GGGGAAC
CGGG
GTGCAGGCGGCAACAGGCGATCGTGGCGCGGGCAGCGAGTGCGGGACGAGGAGGCCGAGAGCGGGCTCCTTTGCAC
Stop codons TAA (829),
Slippery sequence
GGGGAAC (877 - 883)
Spacer CGGG (4 nt)
Stimulatory structure
GTGCAGGCGGCAACAGGCGATCGTGGCGCGGGCAGCGAGTGCGGGACGAGGAGGCCGAGAGCGGGCTCCTTTGCAC (888 - 963)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Signal
Match sequences

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<