Overall information
FSDB ID PP1E0003 Type +1 frameshifting
Data PREDICTED Kingdom eukaryota
Definition Caenorhabditis elegans ornithine decarboxylase antizyme, involved in polyamine regulation and subject to a conserved translational frameshifting from yeast to mammals (9.3 kD) (1G671) complete mRNA. 950 bp mRNA linear INV 26-JAN-2005
Resource [1] Ivanov IP, Matsufuji S, Murakami Y, Gesteland RF, Atkins JF. EMBO J. 2000 Apr 17;19(8):1907-17.
Nucleic acid sequence NM_059356
Amino acid sequence
gene 
111..359
/gene="1G671"
/locus_tag="1G671"
CDS Click for details
Graphical view

116
TGACCGCCTCCCCATGCTCGACCCAGCCCGGCGACGTCGGATGGTGT
TTTTGA
CGCC
CCCCATGGCGTGCTCACCAAATTGCCGAACGAAACTCGCGCTATCGTATCGGCCGTTTCTCCAAACTGGCGCGTGACATCGATTGGC
Stop codons TGA (116),
Slippery sequence
TTTTGA (163 - 168)
Spacer CGCC (4 nt)
Stimulatory structure
CCCCATGGCGTGCTCACCAAATTGCCGAACGAAACTCGCGCTATCGTATCGGCCGTTTCTCCAAACTGGCGCGTGACATCGATTGGC (173 - 259)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model +1 eukaryote frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene oaz gene
Sequence type Patial genome
Direction + strand
Signal
Match sequences

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<