Overall information
FSDB ID EP1E0003 Type +1 frameshifting
Data EXPERIMENTAL Kingdom eukaryota
Definition Human mRNA for ornithine decarboxylase antizyme, ORF 1 and ORF 2. 1063 bp mRNA linear PRI 02-AUG-2002
Resource [1] Tewari DS, Qian Y, Thornton RD, Pieringer J, Taub R, Mochan E, Tewari M. Biochim Biophys Acta. 1994 Dec 14;1209(2):293-5.
[2] Yang D, Takii T, Hayashi H, Itoh S, Hayashi M, Onozaki K. Biochem Mol Biol Int. 1996 Apr;38(5):957-64.
[3] Ivanov IP, Matsufuji S, Murakami Y, Gesteland RF, Atkins JF. EMBO J. 2000 Apr 17;19(8):1907-17.
Nucleic acid sequence D78361
Amino acid sequence
gene
ORF1-ORF2
CDS Click for details
Graphical view

254
TAAGCCTGCACAGCCGCGGCGGCAGCAGCAGTGAGAGTTCCAGGGTCTCCCTCCACTGCTGTAGTAACCCGGGTCCGGGGCCTCGGTGGTGC
TCCTGA
TGCC
CCTCACCCACCCCTGAAGATCCCAGGTGGGCGAGGGAATAGTCAGAGGGATC
Stop codons TAA (254),
Slippery sequence
TCCTGA (346 - 351)
Spacer TGCC (4 nt)
Stimulatory structure
CCTCACCCACCCCTGAAGATCCCAGGTGGGCGAGGGAATAGTCAGAGGGATC (356 - 407)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model +1 eukaryote frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene oaz gene
Sequence type Patial genome
Direction + strand
Signal
Match sequences

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<