Overall information
FSDB ID EM1V0025 Type -1 frameshifting
Data EXPERIMENTAL Kingdom viruses
Definition Saccharomyces cerevisiae virus L-A L1 segment capsid protein and RNA polymerase gene, complete cds. 4580 bp ds-RNA linear VRL 28-MAR-2000
Resource [1] Dinman JD, Icho T, Wickner RB. Proc Natl Acad Sci U S A. 1991 Jan 1;88(1):174-8.
[2] Dinman JD, Wickner RB. J Virol. 1992 Jun;66(6):3669-76.
[3] Tu C, Tzeng TH, Bruenn JA. Proc Natl Acad Sci U S A. 1992 Sep 15;89(18):8636-40.
[4] Dinman JD, Wickner RB. Genetics. 1994 Jan;136(1):75-86.
[5] Dinman JD, Wickner RB. Genetics. 1995 Sep;141(1):95-105.
[6] Park CM, Lopinski JD, Masuda J, Tzeng TH, Bruenn JA. Virology. 1996 Feb 15;216(2):451-4.
[7] Cui Y, Dinman JD, Peltz SW. EMBO J. 1996 Oct 15;15(20):5726-36.
[8] Dinman JD, Kinzy TG. RNA. 1997 Aug;3(8):870-81.
[9] Cui Y, Dinman JD, Kinzy TG, Peltz SW. Mol Cell Biol. 1998 Mar;18(3):1506-16.
[10] Cui Y, Gonzalez CI, Kinzy TG, Dinman JD, Peltz SW. RNA. 1999 Jun;5(6):794-804.
[11] Lopinski JD, Dinman JD, Bruenn JA. Mol Cell Biol. 2000 Feb;20(4):1095-103.
Nucleic acid sequence M28353
Amino acid sequence
CDS Click for details
Graphical view

1937
TAGTGTGCGTCGTACTCAGCA
GGGTTTA
GGAGT
GGTAGGTCTTACGATGCCAGCTGTAATGCCTACCGGAGAACCTAC
Stop codons TAG (1937),
Slippery sequence
GGGTTTA (1958 - 1964)
Spacer GGAGT (5 nt)
Stimulatory structure
GGTAGGTCTTACGATGCCAGCTGTAATGCCTACCGGAGAACCTAC (1970 - 2014)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

Run FSFinder
(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<