Overall information
FSDB ID EM1P0003 Type -1 frameshifting
Data EXPERIMENTAL Kingdom prokaryota
Definition E. coli insertion element IS150 complete sequence. 1443 bp DNA linear BCT 17-FEB-1997
Resource [1] Vogele K, Schwartz E, Welz C, Schiltz E, Rak B. Nucleic Acids Res. 1991 Aug 25;19(16):4377-85.
[2] Haas M, Rak B. J Bacteriol. 2002 Nov;184(21):5833-41.
Nucleic acid sequence X07037
Amino acid sequence
gene
IS 150
CDS Click for details
CDS Click for details
Graphical view

509
TGAAACGCGGCTTATGTATCT
AAAAAAG
CTGA
AAGCCTTAGCTCATCCCACGAAAAAGTGAAAGTACTCAACGAGCTAAGGCAGTTTTATCCTCTTGATGAGCTTCTCAGGGCT
Stop codons TGA (509),
Slippery sequence
AAAAAAG (530 - 536)
Spacer CTGA (4 nt)
Stimulatory structure
AAGCCTTAGCTCATCCCACGAAAAAGTGAAAGTACTCAACGAGCTAAGGCAGTTTTATCCTCTTGATGAGCTTCTCAGGGCT (541 - 622)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<