Overall information
FSDB ID EM1P0004 Type -1 frameshifting
Data EXPERIMENTAL Kingdom prokaryota
Definition Escherichia coli plasmid pIP1100 class II integron multidrug resistance locus, partial sequence. 5350 bp DNA linear BCT 05-NOV-2003
Resource [1] Sekine Y, Nagasawa H, Ohtsubo E. Mol Gen Genet. 1992 Nov;235(2-3):317-24.
Nucleic acid sequence AY183453
Amino acid sequence
Graphical view

1301
AAAAAAC
TCAGG
CCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGG
Slippery sequence
AAAAAAC (1301 - 1307)
Spacer TCAGG (5 nt)
Stimulatory structure
CCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGG (1313 - 1367)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

Run FSFinder
(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<