Overall information
FSDB ID EP1E0012 Type +1 frameshifting
Data EXPERIMENTAL Kingdom eukaryota
Definition Saccharomyces cerevisiae tRNA-Cys gene, complete sequence; 5' sigma element long terminal repeat, complete sequence; gag3 (gag3) gene, complete cds; POL3 (POL3) gene, partial cds; and 3' sigma element long terminal repeat, complete sequence.
Resource [1] Burck CL, Chernoff YO, Liu R, Farabaugh PJ, Liebman SW. RNA. 1999 Nov;5(11):1451-7.
[2] Stahl G, Salem SN, Chen L, Zhao B, Farabaugh PJ. Eukaryot Cell. 2004 Apr;3(2):331-8.
[3] Sundararajan A, Michaud WA, Qian Q, Stahl G, Farabaugh PJ. Mol Cell. 1999 Dec;4(6):1005-15.
[4] Pande S, Vimaladithan A, Zhao H, Farabaugh PJ. Mol Cell Biol. 1995 Jan;15(1):298-304.
[5] Farabaugh PJ, Zhao H, Vimaladithan A. Cell. 1993 Jul 16;74(1):93-103.
[6] Vimaladithan A, Farabaugh PJ. Mol Cell Biol. 1994 Dec;14(12):8107-16.
[7] Li Z, Stahl G, Farabaugh PJ. RNA. 2001 Feb;7(2):275-84.
Nucleic acid sequence M34549
Amino acid sequence
gene 
485..1408
/gene="gag3"
CDS Click for details
gene 
1368..5180
/gene="POL3"
CDS Click for details
Graphical view

1365
TGAACGAATGTAGAGCACGTAAG
GCGA
GTTCTAAC
CGATCTTGAACTCGAATCAAAAGACCAACAAACTCCTTTTATCAAAACCTTACCAATTGTACACTATATCG
Stop codons TGA (1365),
Slippery sequence
GCGA (1388 - 1391)
Spacer GTTCTAAC (8 nt)
Stimulatory structure
CGATCTTGAACTCGAATCAAAAGACCAACAAACTCCTTTTATCAAAACCTTACCAATTGTACACTATATCG (1400 - 1470)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model +1 eukaryote frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Signal
Match sequences

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<