Overall information
FSDB ID PM1V0014 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Subterranean clover mottle virus, complete genome. 4258 bp ss-RNA linear VRL 17-JUN-2006
Resource [1] Dwyer GI, Njeru R, Williamson S, Fosu-Nyarko J, Hopkins R, Jones RA, Waterhouse PM, Jones MG. Arch Virol. 2003 Nov;148(11):2237-47.
Nucleic acid sequence NC_004346
Amino acid sequence
gene
605..3504
/locus_tag="SCMoVgp2"
/db_xref="GeneID:955780"
CDS Click for details
Graphical view

1828
TGACATTATGCTCGAGCA
TTTAAAC
TGCCAGC
GGGTGGCCACAACTTCAAAAGTTGTGTCGCCACCC
Stop codons TGA (1828),
Slippery sequence
TTTAAAC (1846 - 1852)
Spacer TGCCAGC (7 nt)
Stimulatory structure
GGGTGGCCACAACTTCAAAAGTTGTGTCGCCACCC (1860 - 1894)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<