Overall information
FSDB ID EM1V0030 Type -1 frameshifting
Data EXPERIMENTAL Kingdom viruses
Definition Red clover necrotic mosaic virus RNA-1, complete sequence. 3890 bp ss-RNA linear VRL 14-JUN-1996
Resource [1] Kim KH, Lommel SA. Virology. 1998 Oct 10;250(1):50-9.
Nucleic acid sequence J04357
Amino acid sequence
gene 
no annotation
CDS Click for details
Graphical view

822
TGA
GGATTTT
TAGGC
GGCCCACTCAGCTTTCCGGTTGAAGATGCCCCATATCCTATTTTAGGCATCCCGGAAATCAGGGTAGCTGAGAAGCGGGCC
Stop codons TGA (822),
Slippery sequence
GGATTTT (825 - 831)
Spacer TAGGC (5 nt)
Stimulatory structure
GGCCCACTCAGCTTTCCGGTTGAAGATGCCCCATATCCTATTTTAGGCATCCCGGAAATCAGGGTAGCTGAGAAGCGGGCC (837 - 917)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

Run FSFinder
(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Signal
Match sequences

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<